Cheap flights from Puerto Ayora

Baltra
GPS
To

Air connectivity between Puerto Ayora and the outside world is provided through Baltra Airport, located 33 km from the city center. The route network includes several key domestic destinations, allowing tourists to travel conveniently between the Galapagos Islands and the mainland. The highest passenger traffic is directed toward Quito, with 19 flights per week, as well as Guayaquil (12 flights per week) and Cuenca.

Two airlines operate on these routes, ensuring stable connections with the country's largest cities. The majority of flights are operated by Latam Airlines Group and Avianca, both offering modern on-board service. Further down the page, you will find detailed city cards with convenient filters to help you navigate the available options for your next journey.

Recent deals from Puerto Ayora

LA
$ 168

Puerto Ayora — Guayaquil

11:3014:21
22 Sep 2026
1 h 51 m
Direct flight
LA
$ 177

Puerto Ayora — Cuenca

11:0713:59
26 Sep 2026
1 h 52 m
Direct flight
LA
$ 187

Puerto Ayora — Quito

09:5014:13
15 Sep 2026
3 h 23 m
Direct flight

Flight insights from Puerto Ayora

Data-driven trends for direct flights from Puerto Ayora — how often airlines fly, where they go, and typical fares and flight times.

Most frequent destinations

The most frequent direct destinations from Puerto Ayora are Quito, Guayaquil and Cuenca. Quito leads with around 19 flights a week.

Direct routes & fares

Popular non-stop routes from Puerto Ayora range from Quito at $149 to San José at $360 — a quick way to compare direct-flight fares.

Cheapest destinations

The cheapest destinations from Puerto Ayora right now are Quito from $149, Guayaquil from $157 and Cuenca from $182.

Longest direct flights

The longest direct flight from Puerto Ayora is to Amsterdam at about 13h 52m, followed by Madrid (13h 2m) and Buenos Aires (6h 55m).

  • Amsterdam13h 52m
  • Madrid13h 2m
  • Buenos Aires6h 55m
  • New York City6h 45m
  • Santiago5h 50m

Popular destinations from Puerto Ayora

QuitoEcuador
Quito
19 flights/weekFrom $ 149
GuayaquilEcuador
Guayaquil
12 flights/weekFrom $ 157
CuencaEcuador
Cuenca
2 flights/weekFrom $ 182
Panama CityPanama
Panama City
From $ 270
San JoséCosta Rica
San José
From $ 360
LimaPeru
Lima
From $ 303
New York CityUnited States
New York City
Check price
Mexico CityMexico
Mexico City
From $ 444
MedellínColombia
Medellín
Check price
San SalvadorEl Salvador
San Salvador
Check price
BogotaColombia
Bogota
From $ 340
MiamiUnited States
Miami
Check price
Punta CanaDominican Republic
Punta Cana
From $ 523
LojaEcuador
Loja
Check price
AtlantaUnited States
Atlanta
Check price
SantiagoChile
Santiago
From $ 327
Buenos AiresArgentina
Buenos Aires
From $ 424
HoustonUnited States
Houston
Check price
Fort LauderdaleUnited States
Fort Lauderdale
Check price
Santa RosaEcuador
Santa Rosa
Check price
AmsterdamNetherlands
Amsterdam
Check price
MadridSpain
Madrid
Check price
CocaEcuador
Coca
Check price
BalboaPanama
Balboa
Check price
MantaEcuador
Manta
Check price
See all destinations from Puerto Ayora

Frequently asked questions

How many destinations are available from Puerto Ayora?
Currently, there are 3 regular destinations available from the city. All flights connect the Galapagos Islands with key transport hubs on mainland Ecuador.
What are the most popular destinations from Puerto Ayora?
The highest demand is for flights to Quito (19 flights per week) and Guayaquil (12 flights per week). Direct service to Cuenca is also available, with flights departing twice a week.
How many airlines fly from Puerto Ayora?
Scheduled passenger services are operated by 2 airlines. The bulk of the flights are provided by the largest Latin American carriers — Latam Airlines Group and Avianca.
Which airports serve Puerto Ayora?
The main aviation hub is Baltra Airport (GPS), also known as Seymour Airport. It is located approximately 33 km from the city center on the neighboring island of Baltra.
How can I find cheap flights from Puerto Ayora?
To find the best fares, it is recommended to plan your trip in advance, as demand for flights between the islands and the mainland is consistently high. It is helpful to compare offers from both carriers and check flights on different days of the week, taking into account the high frequency of departures to Quito and Guayaquil.

We use cookies and services to collect user information. This is essential for the functioning of the site and for marketing purposes. You can find out more in .